rs30809705 SNP Detail

Summary

• ID
  rs30809705
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163900424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCTAGTAT ACCATATATA TGTATGTGTA AACATATACA
  TATTTAAACA TATGTGTGTT TATATTTGTA TGCATACATA TGTAGTGTAC ACACATATAC
  R
  TATATAGTGT ACTAGGTTAC AGTGGAGGAT ATATACACAT CCTAATGATA TGCATACACA
  CACAGACACA TATACAGAGA GAGAGAGAGA GAAATACAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss44966935	mCV23375900	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss145971433	ENSMUSSNP4804050	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30809705					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163900424 () rs orientation: forward

Symbol	Name	Function Class
Gm57120	predicted gene, 57120	within coordinates
Rr396477	regulatory region 396477	1351 bp downstream
Rr396478	regulatory region 396478	360 bp downstream
Rr422140	regulatory region 422140	213 bp distal
Rr422141	regulatory region 422141	393 bp proximal
Sell	selectin, lymphocyte	within coordinates