rs30809908 SNP Detail

Summary

• ID
  rs30809908
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152915698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTCTGCAG AATTGTTTCC TCTGCATGAA
  CAGCTCAGAA ATGGTCCACA GTAGCCCCTC AGGCCTCCAC AAGAGCTGTC TGCACGTTTC
  CCTTCTCTTG TATGCTGTCT TCTCATCCAG ATATCCAAGG CAGGATTTCT ATCGACTACT
  M
  TTCTAGTCCC TTCAGCTAAG GGTGGGGAAG GAAAGGGTCA GAGTTCACAA ACTGGGTGTC
  AATTTCCTAT CACTGTGGGT CCCCAAGCCA GTACAGAAAA ACACTGTAGA CCAAGACGAT
  GTTTCTCAAG ATCTCTTCCA CAGGATGAAA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44967293	mCV24633908	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A	A
ss145736583	ENSMUSSNP5412026	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
ss320070032	CHEV_1_154887077	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30809908					SNP	C	C	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152915698 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Ertd182e	DNA segment, Chr 1, ERATO Doi 182, expressed			523 bp distal
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420580	regulatory region 420580			1742 bp distal
Rr420581	regulatory region 420581			10 bp proximal
Rr420582	regulatory region 420582			405 bp proximal
Rr420583	regulatory region 420583			584 bp proximal