rs30810785 SNP Detail

Summary

• ID
  rs30810785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17839716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT GGTTTGAGAA AGATCTGTCC
  Y
  AGGGCTCTCA ATCTTCTCTT CACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45469162	mCV22663395	ABI	CRAMUS_MOUSE	f	SNP		T	C					C	C
ss46817673	NES10865025	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C		C	C		C	C	C	C		C
ss134653761	ENSMUSSNP4438713	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320673700	CHEV_3_17685552	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30810785					SNP	T	T	C	C	T	T	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817673	NES10865025	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17839716 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	476 bp proximal
Gm10742	predicted gene 10742	within coordinates
Gm56811	predicted gene, 56811	within coordinates
Gm65999	predicted gene, 65999	within coordinates
Gm66000	predicted gene, 66000	1788 bp downstream
Rr573837	regulatory region 573837	1145 bp distal
Rr573838	regulatory region 573838	within coordinates
Rr573839	regulatory region 573839	50 bp proximal
Rr573840	regulatory region 573840	378 bp proximal
Rr573841	regulatory region 573841	497 bp proximal
Rr573842	regulatory region 573842	795 bp proximal
Rr573843	regulatory region 573843	1576 bp proximal
Tssr32672	transcription start site region 32672	236 bp upstream
Tssr32673	transcription start site region 32673	within coordinates
Tssr32674	transcription start site region 32674	16 bp downstream
Tssr32675	transcription start site region 32675	55 bp downstream
Tssr32676	transcription start site region 32676	755 bp downstream
Tssr32677	transcription start site region 32677	1282 bp downstream