rs30810818 SNP Detail

Summary

• ID
  rs30810818
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70442695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACCCAGG AAGCCTGGGC
  ACACCGGCTG TGTGCTACCC CTCCCTGCCC GGCTGAGGGC TTGAGGCCAA ACTGCCTTCG
  GCATCAGCAG TTGCACCCAT CAGCTGACAG GCCTTCCTTC CCTAATGTCA CTGTGTCCCA
  CCCTCCCAGC AAATCCAGAA GTGTCCTCTC TAGGGAAAAA GGACCAGTTC TCCATCACCA
  M
  CTTGTTTCAG GAGCTACTGA CCCTAGGATA CCTCCATCGG CTCCCCTCCC ACTGAGCTCC
  TGGGAATACT CGAGGTTAGG ATAGGGCCCC CCATGGTGGT CCTGGTTTTT CTCCCAGCAG
  GCTGCCTGGA GACATTTGGC AGAACCTAAG GAAGACAGAG GTCTCCTGGG GAATTGGTAT
  CTGTCTAGCA TAAAACGGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39223886	mCV24337819	ABI	CRAMUS_MOUSE	f	SNP		A	C					C
ss51532207	NES14630569	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C		A	C	C	A	A	C	C	A	C
ss139681795	ENSMUSSNP5101810	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30810818					SNP	A	A	C	C	C	C	C	C	A	C	C	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51532207	NES14630569	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70442695 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6688	CpG island 6688			381 bp proximal
Gm26908	predicted gene, 26908			within coordinates
Gm49417	predicted gene, 49417			78 bp upstream
Rr494880	regulatory region 494880			1116 bp distal
Rr494881	regulatory region 494881			within coordinates
Rr494882	regulatory region 494882			within coordinates
Rr494883	regulatory region 494883			89 bp proximal
Rr494884	regulatory region 494884			766 bp proximal
Rr494885	regulatory region 494885			902 bp proximal
Sorbs3	sorbin and SH3 domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr126403	transcription start site region 126403			1839 bp downstream
Tssr126404	transcription start site region 126404			66 bp downstream
Tssr126405	transcription start site region 126405			9 bp downstream
Tssr126406	transcription start site region 126406			within coordinates
Tssr129550	transcription start site region 129550			1793 bp upstream
Tssr129551	transcription start site region 129551			1780 bp upstream
Tssr129552	transcription start site region 129552			1766 bp upstream
Tssr129553	transcription start site region 129553			580 bp downstream
Tssr129554	transcription start site region 129554			627 bp downstream
Tssr129555	transcription start site region 129555			739 bp downstream
Tssr129556	transcription start site region 129556			792 bp downstream
Tssr129557	transcription start site region 129557			836 bp downstream
Tssr129558	transcription start site region 129558			865 bp downstream