rs30811257 SNP Detail

Summary

• ID
  rs30811257
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136146655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGGGGCAC GGATCACTAT ATTATTGTTT
  ATGTAtttgc ttgttttgca acaggatctc tcagtgtagt tctgaatatt ctggacctcg
  ctatgtagac caggctggcc tggaactcct ctgagatcca cctgagtgct gggagcacca
  W
  acctggctac tttatattta aatggtccca caagtgaagt gctctctgca gtttctaagc
  acaaaaccac tgtgaggtga cttggagaga aagtaagact gctagactga cttcactcaa
  actgagttac agtgtcactg ggcatgggtt                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44966655	mCV24740060	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss145554230	ENSMUSSNP6002875	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T
ss319995079	CHEV_1_138115494	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30811257					SNP	A	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136146655 () rs orientation: forward

Symbol	Name	Function Class
Gm26568	predicted gene, 26568	within coordinates
Inava	innate immunity activator	within coordinates
Tssr229	transcription start site region 229	1467 bp downstream
Tssr9051	transcription start site region 9051	1813 bp upstream