rs30811738 SNP Detail

Summary

• ID
  rs30811738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119668813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACTGACC CAGCATATGG
  AGAGTAGGAG TCCAAAACAG AATGAAGACT GACTATGTGA CGGGTAATCT TGGTCAACCT
  GACTCCACCT ACAGTCACTA AAACCCAAGC AGCTGAGCAC ACCTTAAGTC CAGATCCTTT
  TAGGTTGGAA GACACCACAC TCTCCACTCC ACCATTTAAA CCATTTGAGG CAGTAAGTAG
  R
  AAGACACACT GTAAATCTGG GCCACAACTT CTAGTGGCAG CCTAAAAAGG ACACTAAAGA
  GGAAGATTTT GTCTTTTGGC TGTCCTCAAG AATGAGGGCA CTCTTTCACT GGCAACTCTT
  TGATCCTCTT GCTGAGGCAT CCTTCAGTGG TATTAGAACC TAATTATTTA GGGTTCCAAT
  GTATACTGCA GTGAGCTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45968423	mCV22294995	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss133592554	ENSMUSSNP4985775	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A		G
ss321929197	CHEV_6_119641870	CHEVERUD	SCREENING_POP	f	SNP					A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30811738					SNP	A	A	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119668813 () rs orientation: forward

Symbol	Name	Function Class
Erc1	ELKS/RAB6-interacting/CAST family member 1	within coordinates
Tssr58512	transcription start site region 58512	1652 bp downstream