rs30812676 SNP Detail

Summary

• ID
  rs30812676
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17340990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAA CCTGCTACCT ACTTTGATTG
  W
  TTGCATTTAA AACAGACACT GGCAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45967470	mCV22810830	ABI	CRAMUS_MOUSE	f	SNP		A					T
ss47811134	NES11726138	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	A		T	A
ss133012934	ENSMUSSNP6585435	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321754377	CHEV_6_17290991	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30812676					SNP	A	A	A	A	A	A	T	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47811134	NES11726138	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17340990 () rs orientation: forward

Symbol	Name	Function Class
Cav1	caveolin 1, caveolae protein	within coordinates
Gm15581	predicted gene 15581	within coordinates
Gm68216	predicted gene, 68216	within coordinates
Rr143503	regulatory region 143503	192 bp distal
Rr148589	regulatory region 148589	within coordinates
Tssr55046	transcription start site region 55046	1498 bp downstream
Tssr55047	transcription start site region 55047	895 bp downstream