rs30813045 SNP Detail

Summary

• ID
  rs30813045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136540658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCGGGTC CACAGGCGTT
  CTTCCACGGG GGCCAAGGAA AGGGTAAAGG TAGGAGCCCT GGGAATCAGG CAACTCCGAG
  GTAGGCTTCT AAATTACAGA GCTCCATGTT GTCTCGGATA GAAGATGATG GGATGTGTGT
  CACTACTAGA AGGTCCTATA CTTTTTAGAT GTGCTTTAAA CATTATCTTT GCTGGGAAAC
  Y
  TAAAGACAAT TAATTAAACC TAGGAGTAGA TCTGTGAGGA AAGTTGTGCA TAGAATAAGA
  CAGCTACTCA CTGAGAGACT CTGTTCAGAA AAAACAAACA CTTATTTCCT TTTTTTGGGG
  GGGTGTATGG TGTGTGTGTG TGTGTGTGTG TGTGTATGTC TATCTATGTG TGTCTCTATA
  TGTGTCTGTG TATTTGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46986635	NES10885977	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30813045					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986635	NES10885977	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136540658 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66095	predicted gene, 66095			within coordinates
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585882	regulatory region 585882			562 bp distal
Rr585883	regulatory region 585883			896 bp proximal