rs30813858 SNP Detail

Summary

• ID
  rs30813858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136535308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTGGTTG GACCCCCACA
  TCTTTGATTT ATATTTCAGA TGATTGTTTT TTGAGTGGGA TGATGAAGAA TACCCATGCA
  AGGACCACAG GGACCACAGT AGCTCTTTCC CTCCTTCTTT GGGTGAAAAG ATCCAGGCAG
  AAAAGAATGA GTTATTAGCT TAGCGCAAGC AAACCAGCAC TTGTGGTAAA GGATTAGAAT
  Y
  ACTGGCTATC AGTGGTCATC GTTAATGGAT TTTCCATGGT GAAATTAATA CAGGTTCTTC
  AGGATTTCGT TAGGCACTTC ATCATCCTAG GCATTGCTGA AGTTTGAACT TGCCACGCTC
  TAAAGTTCTG TGGCAGTGTG GTTTCAATTA GGGTGTGGAG TGGAGCGGGC ACGTAGCAAA
  ATACATTTTG ACTTTGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46986579	NES10886155	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30813858					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986579	NES10886155	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136535308 () rs orientation: forward

Symbol	Name	Function Class
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	Intron
Rr585880	regulatory region 585880	732 bp distal
Rr585881	regulatory region 585881	1243 bp proximal