rs30813862 SNP Detail

Summary

• ID
  rs30813862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136535581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACTTCAT CATCCTAGGC
  ATTGCTGAAG TTTGAACTTG CCACGCTCTA AAGTTCTGTG GCAGTGTGGT TTCAATTAGG
  GTGTGGAGTG GAGCGGGCAC GTAGCAAAAT ACATTTTGAC TTTGTCTTTC CTGTGACATT
  TTCCTTCTCT CCTTTCCCGG AATGACTGTC ACCTTATCAT ATCTTCCAGC AATGCACACA
  Y
  TGGTATTTTT ATTGGAATCA CACGGAATAG TTTATGAATA GCTCCAGTTT TTGTCACTCT
  AAGAATAATA CTGCCCCTAG CAGTGGCCCC GTTTCTGTGT ACAGCTGGTT TTTGATGTAT
  ATAATTCAGG TATCTGGAGC AAGCAGAAAG AGGCAGTCCT GGCTCGTCCC TATTTTAGAA
  TTAGCCCTAC ATCCATAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46986583	NES10886157	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30813862					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986583	NES10886157	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136535581 () rs orientation: forward

Symbol	Name	Function Class
Gm66095	predicted gene, 66095	1759 bp downstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	Intron
Rr585880	regulatory region 585880	1005 bp distal
Rr585881	regulatory region 585881	970 bp proximal