rs30814107 SNP Detail

Summary

• ID
  rs30814107
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60701091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATA CCCACGTGTT AGGCTGTAAT
  R
  GGGACAGGAA CAGTGCGAGT CTCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46447689	mCV23023732	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss132265188	ENSMUSSNP599849	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30814107					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60701091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2996	CpG island 2996	625 bp proximal
Gm74448	predicted gene, 74448	928 bp upstream
Rr402613	regulatory region 402613	900 bp upstream
Rr448484	regulatory region 448484	1636 bp distal
Rr448485	regulatory region 448485	1249 bp distal
Rr448486	regulatory region 448486	438 bp proximal
Rr448487	regulatory region 448487	990 bp proximal
Shmt1	serine hydroxymethyltransferase 1 (soluble)	within coordinates
Tssr108307	transcription start site region 108307	1435 bp upstream
Tssr108308	transcription start site region 108308	1390 bp upstream
Tssr108309	transcription start site region 108309	759 bp downstream
Tssr108310	transcription start site region 108310	840 bp downstream
Tssr108311	transcription start site region 108311	963 bp downstream
Tssr108312	transcription start site region 108312	990 bp downstream