rs30815315 SNP Detail

Summary

• ID
  rs30815315
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129156073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACAATGACAG CATTGCATAC ACTAGCAAGC GTTTGCTGCA AGGAACCTGA TATAGCTGTC
  TCTTGTGAGA CTAGGCCGGG GCCTAGCAAA CACATAAGTG GATGCTCTCA GTCAGCTATT
  GGATGGATCA CAGGGCCCCC AATGGAGGAG CTAGAGAAAG TATCCAAGGA GCTAAAGAGA
  TCTGCAACCC TGTAGGTGCA ACATTATGAA CTAACCAGTA CCCCGGAGCT CTTGACTCTA
  GCTGCATATG TATCAAAAGA TGGCCTGGTC GGCCATCACT GGAAAGAGAG GCCCATTGGA
  M
  ACGCAAACTT TATATGCCCC AGTACAGGGG AATGCCAGGG CCAAAAAAAT GGGAATGGGT
  GGGTAGGAAA GTGGGGGGCA GGGTGTGGGG GACTTTTGGG CTAGCATTGG AAATATAATT
  GAGGAAAATA TGTAATAAAA AAAAGAGTTG ACAGCTTTCT TTCAAAACTT TAACCAAGAC
  AAATTAATAA GTAAGTTACA GTTGTATTTT TTCAAAGGAG ATGGACTCAG GGCTTAAAAG
  CTCTTGCCAC ATAATCCTGA CCATCTGGCC TGGATCACAG GAGAACAGGG CAGCAGGAGA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45968170	mCV24120172	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30815315					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129156073 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	1505 bp upstream
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	within coordinates
Rr368193	regulatory region 368193	1227 bp upstream
Rr639386	regulatory region 639386	185 bp proximal
Rr639387	regulatory region 639387	1015 bp proximal
Rr639388	regulatory region 639388	1361 bp proximal
Rr639389	regulatory region 639389	1516 bp proximal
Tssr59096	transcription start site region 59096	1503 bp upstream
Tssr59097	transcription start site region 59097	1529 bp upstream
Tssr59098	transcription start site region 59098	1807 bp upstream
Tssr59099	transcription start site region 59099	1841 bp upstream
Tssr59100	transcription start site region 59100	1865 bp upstream