rs30816130 SNP Detail

Summary

• ID
  rs30816130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172301828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCA GCCATTACTG GCATTGGGAA
  Y
  CCTGCTGATG TCAACTTCAT TGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss44967267	mCV23005054	ABI	CRAMUS_MOUSE	f	SNP		C	C				T		C
ss49751709	NES13028081	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C		T	C	C	C		T	C		C
ss120011344	PARCsnp_1.19750	PARC_SEQ	INBRED	f	SNP							T		C
ss120014412	PARCsnp_1.09781	PARC_SEQ	INBRED	f	SNP							T		C
ss146193197	ENSMUSSNP485130	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss320125591	CHEV_1_174404392	CHEVERUD	SCREENING_POP	f	SNP												C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs30816130					SNP	C	C	C	C	T	C	T	T	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751709	NES13028081	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172301828 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	within coordinates
Gm70809	predicted gene, 70809	within coordinates
Gm70814	predicted gene, 70814	within coordinates
Rr396588	regulatory region 396588	923 bp downstream
Rr423578	regulatory region 423578	805 bp proximal
Slamf9	SLAM family member 9	1099 bp upstream
Tssr10198	transcription start site region 10198	1110 bp upstream
Tssr10199	transcription start site region 10199	1126 bp upstream
Tssr10200	transcription start site region 10200	1166 bp upstream
Tssr15219	transcription start site region 15219	904 bp downstream