rs30816554 SNP Detail

Summary

• ID
  rs30816554
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136538125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTGCAG ACCTGGGATT
  TTTGTGATTT TTGTATGCTG CTCAGGGAAC CCATTCAGGA TTCATAGAAC ATTTTCTCAA
  ATAAGGCAGA AGGAAACAAC TGCACTAGGA AACTCTGTAA TTAGGTACCC AAGTCTGCGA
  AGTTAGAAAC AGCAGTGGTG AAGAGTATTG GCGGGAAAGC CTAGCTGGCC AGCTCTCCAT
  W
  AAAAGGCTTC AGAAGATCCC AAGCTTAGTG AAGACAGCCT AGCCAAGGTT GTGAGTAGCC
  AGGCTCTGCC CCTGTGTTGT GGGCCCTGTA GGGTTTCTCA CTGCTCTTTA AGGCATACTC
  ATATTCCTGC GCTGGAAACT TGTATTTCAT TCTTTCTCAT TCTACATCTC TAGATGGCCC
  CTGATTCTTT CCTTCATTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46986607	NES10885962	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30816554					SNP	A	A	A	A	A	T	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986607	NES10885962	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136538125 () rs orientation: forward

Symbol	Name	Function Class
Gm66095	predicted gene, 66095	within coordinates
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	Intron
Rr585881	regulatory region 585881	1199 bp distal
Rr585882	regulatory region 585882	1516 bp proximal