rs30816560 SNP Detail

Summary

• ID
  rs30816560
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136538659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGACAGCT CCTCACTGTC
  CCATACTTTC CCATTTGTGT GTGCACCTGT GGTTGCAATT TTCTTGGGGA TACTTTGCAT
  AAAGAAACCT TTTTTCATCA TTAAATGTGC CCAAGACTGA GACCAGGACC TTTGTCTAGA
  AGAAAATAGC CGACTTCTGG AAACAGAAGC ATGGAGCCCT AACAGCTTGC TTTCCCAGAC
  M
  GACCTCTTAA CTCTGTGCCC CAGAAAATTG AGAAGGAGAA CATTTGGAGA TGGCTTGGGA
  AAAATTGAAA CTGTGCTCAC TAAATCTGGG ATTGCTGAGG GGCTCTGGCA TTCCCTGCCT
  CCTTTGCGTG TCATTTGTCT CTTTTCTAAT TCCTATTTTT AAAAGATCTG CTAGATTAAT
  TCTGCTAAAA TGCCATTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46986613	NES10885965	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30816560					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986613	NES10885965	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136538659 () rs orientation: forward

Symbol	Name	Function Class
Gm66095	predicted gene, 66095	within coordinates
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	Intron
Rr585881	regulatory region 585881	1733 bp distal
Rr585882	regulatory region 585882	982 bp proximal