rs30816871 SNP Detail

Summary

• ID
  rs30816871
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:14013232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTGGCCGGCT GTCCCCGGCC CACGCAGAGT GCTGCCTCAG CGCCTCTGTG CTTCCGCCTG
  TTCCAGAAGC TGTCAGGTTC TCTGGCGCAC CCTCTCACCT GTTCAGACTA ATTTCCTAAG
  TTCGGCGGGT CCCGGACCAA GATGGCGACC GCTGCTGCTG TGGCTTAGGT CGCCTCCCCA
  GCCGGGCGGG CACCTGTCCT CCAGTCCGGA AGGTGGCCGG CTGTCCCCGG CCCACACAGG
  GTGCTGCCTC AGCCCCTCTG TGCTTCTGCC TGTTCCAGAG GCTGTCAGGT TCTCTGGCGC
  W
  CCCTCTCACC TGTTCAGACT AATTTCCTAA GTTCGGCGGG TCCCGGACCA AGATGGCGAC
  CGGCTTCTCA TTCTTAAGCT GGTCCAAGAA CCAGGGCTTT AGACTTCCCC ATGCCTCTCA
  ATTCCATATG AGTTTATTTG CCACCTGATG GAGAAGTCTG CCCTCTGTCC TAACTCCCAT
  GGCTATGAAC TTGGCTCATC CCTCCTGTGT TCTCCCTGTA CTCTGCCAAG GATCTGTGCT
  CCCAGTGTTC ATTGGCTTCC TTGACCTTCT TAGCCTTTAG TCTTCTAATA GAGACAGAAA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss46447037	mCV25349810	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs30816871					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:14013232 () rs orientation: forward

Symbol	Name	Function Class
1700019J19Rik	RIKEN cDNA 1700019J19 gene	within coordinates
Rr199406	regulatory region 199406	369 bp proximal