rs30819197 SNP Detail

Summary

• ID
  rs30819197
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178165854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTG TTATGCAAAG GTGGTGTTTT
  R
  TTTAGTTTTT CCACCATTTA ACTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44968035	mCV22831337	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30819197					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178165854 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	205 bp distal
Gm38300	predicted gene, 38300	1312 bp upstream
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	492 bp upstream
Rr29068	regulatory region 29068	within coordinates
Rr372516	regulatory region 372516	within coordinates
Tssr316	transcription start site region 316	1202 bp upstream
Tssr317	transcription start site region 317	698 bp upstream
Tssr318	transcription start site region 318	473 bp upstream
Tssr10387	transcription start site region 10387	1111 bp downstream
Tssr10388	transcription start site region 10388	973 bp downstream
Tssr10389	transcription start site region 10389	387 bp downstream
Tssr10390	transcription start site region 10390	302 bp downstream
Tssr10391	transcription start site region 10391	91 bp downstream
Tssr15483	transcription start site region 15483	1881 bp upstream
Tssr15484	transcription start site region 15484	1171 bp upstream
Tssr15485	transcription start site region 15485	1117 bp upstream
Tssr15486	transcription start site region 15486	1036 bp upstream
Tssr15487	transcription start site region 15487	970 bp upstream
Tssr15488	transcription start site region 15488	637 bp upstream
Tssr15489	transcription start site region 15489	595 bp upstream
Tssr15490	transcription start site region 15490	556 bp upstream
Tssr15491	transcription start site region 15491	528 bp upstream
Tssr15492	transcription start site region 15492	495 bp upstream