rs30819226 SNP Detail

Summary

• ID
  rs30819226
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:61065897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAACAT TGTCAGAGGG
  AAGTTGGAAT CTCCAAAAAC AAATATTTGT AAGGCACTTC TCTTCTTTTT CGGGCACATT
  ATTATACAAT ATCTTCTTAG GACCCAGCCT GTTAACAATG TTAATTAGTT TGAGGTCATA
  AAGTACTTCA TGATCTTTAA AATATGTTTT ATACATTATT TCATAAAATT GGAGCTGTTG
  M
  CAATTATTTG AATTGCTGCA TGTGTTTTGT ATAACAGTAG CCTGTGTGCT TTGCTTTAGA
  CCTCGGTTTA GAAAGGATCT GCGGACCTGT AATGTGCAAG TATGCTATTA TTTTATTGCC
  ATGTCACAGA TCATAGACAA GTACTTTGAT TTGTATTATC TCAAATGCAA AATGGCTCCT
  AAAAGTCCAG TCCTTTCACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46987636	NES10785589	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30819226					SNP	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46987636	NES10785589	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:61065897 () rs orientation: forward

Symbol	Name	Function Class
Rr577474	regulatory region 577474	1395 bp proximal
Rr577475	regulatory region 577475	1687 bp proximal