rs30821943 SNP Detail

Summary

• ID
  rs30821943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119908798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCAGAACT CATCCAGAAA ATTTTCAGTA GAACACCTTG
  AGATGTTTCC TGGGGGGGGG GGGGGGATCA GTAAAATATA AGCAATTCCA CTATATCTAG
  R
  CTCCCAAAAT TCACCAGAAA GAGCAACAAA ATCACACAGC CCACGCTTGA GTCCCTGCCA
  TAATGATTCA GAATTGAAGA TGGTCAAAAT CAGTTTTGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss46447683	mCV22556061	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		A
ss61734978	NES17669797	PERLEGEN	MM_PANEL2	f	SNP	A			A	G	G	A		A	A	G	G		G	A	G
ss138915067	ENSMUSSNP1472156	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
ss324207696	CHEV_12_121183536	CHEVERUD	SCREENING_POP	f	SNP													A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30821943					SNP	A	A	G	A	G	G	A	G	A	A	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61734978	NES17669797	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119908798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5238	CpG island 5238	803 bp proximal
Rr474318	regulatory region 474318	407 bp proximal
Tmem196	transmembrane protein 196	759 bp upstream
Tssr115576	transcription start site region 115576	1041 bp upstream