rs30822454 SNP Detail

Summary

• ID
  rs30822454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130660071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACGGCCT GAGAGGCAAG
  CGGTCTCCAT CTCTGCCCTC TGGAATAGAA GGGCATTACG TTCTTGTCTT CAGACCCCAA
  CCCAGAGAAG GTGAGTCAAT CACTAACCAA CTATTGCTTA TTCTGCAGCA AGGGAAAAGC
  TTTTAAGGGA AGGCAAAGCT ATATATAGGG CTGTGCTGGG GAGTGCTGTA AGAGTGTCTG
  R
  CCCTTTACAC CGGACCTGGG GTTTTCAATC TCTGTTGATC AAATCTCTCC GTTAGCCTGA
  GATTTTCCAG AATTGGAATA TTTTTATGGA GGACCGGGGG ACATCTCTTC CGTTTCTTTA
  TTTAACTTAC ATAATCATAT TGAACAAACA GAAGCCAGAC CCAGGCATGG TGGTATCCAC
  CCATAATCAT AGTACTCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49673610	NES12996682	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30822454					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673610	NES12996682	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130660071 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AA986860	expressed sequence AA986860			Intron
				Noncoding-Transcript-Variant
Gm70818	predicted gene, 70818			1459 bp downstream
Rr417949	regulatory region 417949			348 bp distal
Rr417950	regulatory region 417950			within coordinates
Rr417951	regulatory region 417951			398 bp proximal
Rr417952	regulatory region 417952			1485 bp proximal
Tssr8565	transcription start site region 8565			343 bp downstream
Tssr8566	transcription start site region 8566			282 bp downstream
Tssr8567	transcription start site region 8567			233 bp downstream
Tssr8568	transcription start site region 8568			199 bp downstream
Tssr13523	transcription start site region 13523			284 bp downstream
Tssr13524	transcription start site region 13524			1516 bp downstream