rs30822536 SNP Detail

Summary

• ID
  rs30822536
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050553 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TTTTTCATTT TTCACGTTTT TTAGTGATTT CGTCATTTTT CAAGTCGTCA AGTGGATGTT
  TCTCATTTTC CATGATTTTC AGTTTTCTTG CCATATTCCA CGTCCTACAG TGGACATTTC
  TAAATTTTCC ACCTTTTTCA GTTTTCCTCG CAATATTTCA CGTCCTAAAG TAGGTATATC
  TCATTTTCCG TGATTTTCAG TTTTCTCGCC ATATTCCAGG TCCTTCAGTG TGCATTTCTC
  ATTTTTCACT TTTTTAGTGA TTTCGTCATT TTTCAAGTCG TCAAGTGGAT GTTTCTCATT
  H
  TCCATGATTT TCAGTTTTCT TGCCATATTC CACGTCCTAC AGTGGACATT TCTAAATTTT
  CCACCTTTTT CAGTTTTCCT CGCCATATTT CACGTCCTAA AGTGTGTATT TCTCATTTTC
  CGTGATTTTC AGTTTTCTCG CCATATTCCA GGTCCTTCAG TGGGCATTTC TCATTTTTCA
  CGTTTTTTAG TGATTTAGTC ATTTTTCAAG TCGTCAAGTG GATGTTTCTC ATTTTCCATG
  ATTTTCAGTT TTCTTTCCAT ATTCCACGTC CTACAGTGGA CATTTCTAAA TTTTCCACCT
                                                                   
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss46440775	mCV22795831	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss46448343	mCV23011492	ABI	CRAMUS_MOUSE	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30822536					SNP	C	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050553 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1773 bp downstream
Tssr4285	transcription start site region 4285	1748 bp upstream
Tssr4286	transcription start site region 4286	1644 bp downstream
Tssr4287	transcription start site region 4287	1609 bp upstream
Tssr4288	transcription start site region 4288	1581 bp downstream
Tssr4289	transcription start site region 4289	1486 bp upstream
Tssr4290	transcription start site region 4290	1479 bp downstream
Tssr4291	transcription start site region 4291	1399 bp upstream
Tssr4292	transcription start site region 4292	1363 bp downstream
Tssr4293	transcription start site region 4293	1328 bp upstream
Tssr4294	transcription start site region 4294	1326 bp downstream
Tssr4295	transcription start site region 4295	1253 bp upstream
Tssr4296	transcription start site region 4296	1290 bp downstream
Tssr4297	transcription start site region 4297	1226 bp upstream
Tssr4298	transcription start site region 4298	1208 bp downstream
Tssr4299	transcription start site region 4299	1168 bp downstream
Tssr4300	transcription start site region 4300	1130 bp downstream
Tssr4301	transcription start site region 4301	1112 bp upstream
Tssr4302	transcription start site region 4302	1100 bp upstream
Tssr4303	transcription start site region 4303	1045 bp downstream
Tssr4304	transcription start site region 4304	1016 bp upstream
Tssr4305	transcription start site region 4305	947 bp downstream
Tssr4306	transcription start site region 4306	928 bp upstream
Tssr4307	transcription start site region 4307	907 bp downstream
Tssr4308	transcription start site region 4308	875 bp upstream
Tssr4309	transcription start site region 4309	831 bp upstream
Tssr4310	transcription start site region 4310	784 bp downstream
Tssr4311	transcription start site region 4311	756 bp upstream
Tssr4312	transcription start site region 4312	676 bp downstream
Tssr4313	transcription start site region 4313	617 bp upstream
Tssr4314	transcription start site region 4314	605 bp downstream
Tssr4315	transcription start site region 4315	581 bp downstream
Tssr4316	transcription start site region 4316	554 bp upstream
Tssr4317	transcription start site region 4317	478 bp downstream
Tssr4318	transcription start site region 4318	454 bp upstream
Tssr4319	transcription start site region 4319	397 bp upstream
Tssr4320	transcription start site region 4320	333 bp downstream
Tssr4321	transcription start site region 4321	305 bp upstream
Tssr4322	transcription start site region 4322	206 bp downstream
Tssr4323	transcription start site region 4323	171 bp upstream
Tssr4324	transcription start site region 4324	141 bp downstream
Tssr4325	transcription start site region 4325	90 bp downstream
Tssr4326	transcription start site region 4326	52 bp upstream
Tssr4327	transcription start site region 4327	49 bp downstream
Tssr4328	transcription start site region 4328	within coordinates
Tssr4329	transcription start site region 4329	within coordinates
Tssr4330	transcription start site region 4330	134 bp upstream
Tssr4331	transcription start site region 4331	158 bp downstream
Tssr4332	transcription start site region 4332	264 bp downstream
Tssr4333	transcription start site region 4333	276 bp upstream
Tssr4334	transcription start site region 4334	298 bp downstream
Tssr4335	transcription start site region 4335	445 bp downstream
Tssr4336	transcription start site region 4336	449 bp upstream
Tssr4337	transcription start site region 4337	522 bp downstream