rs30823896 SNP Detail

Summary

• ID
  rs30823896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130731305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATCCAAC GTCACTGCAC
  CGTGGATCTG AGCTCTGGGA AATGAAGGCC ATGAGAGCTT AGGGGAGACT GCATGTGCCT
  AGCTCAATGC TACCTAGAAT AGTCAAGCAC ACACACACAC ACACACACAC ACACACACAC
  ACACACACAC ACACCACCTA GGCCCCCACC TCCACCCCTG CTCTCTGCCG CTTAAATGGA
  Y
  GAGTGAAAGT TAGCCGTTTA CAATGTGTTC TAAGGTTCCA AGGACTGCCA AACACAAATG
  TTACAGGCTT AGTGTCCGCT CCTTTGACAA ACACTTAAGC ACCAGGCCCA ACACTAACAA
  CATAAAAGTG GAGACCCTAT CCTACACATA AAGAAGTCAG TAAACAAAGG AATTACATGA
  TTAAAAATAT AACTGGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss49673260	NES12995376	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs30823896					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673260	NES12995376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130731305 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	1106 bp distal
Rr30372	regulatory region 30372	within coordinates
Tssr8571	transcription start site region 8571	477 bp downstream