rs30823900 SNP Detail

Summary

• ID
  rs30823900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130730867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCACCA GTTTAGAGCT
  CCCCTGGGGT GCTAGGGCTG GGATCTCACG GAGGAATTTG TCTCTTTTAA ACACAGAAAT
  CTCATGAGTA AGGCAAACTC ATGAGCAAAT CTTCCTGGCA GCACCTCACT TGCCAGGACA
  CGCAGTTCCC TGGCCCTGCC TTTCGGGTAG AGCTACCCAG CTACTGGAGC AAACTGAGAA
  Y
  GCACAGCCAG AGTGCCGAGC CCTGGACTCC CGACCACTCT CTCCAGCTTC TCACAAGCCT
  CCCTCTGGCC TCTTGTCTTT GGCTGCAGGT CCCCAGCCTG AGAACGAGAT GGGAAATACT
  TCTTCTCACA CTCTGTCTGC TCCATGGTGA GTCCATAAAC AGCCAGGCTT CAGAGACTGT
  GGGAGAGCTG GCAGTGGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49673264	NES12995372	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30823900					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673264	NES12995372	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130730867 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	668 bp distal
Rr30372	regulatory region 30372	within coordinates
Tssr8571	transcription start site region 8571	39 bp downstream