rs30824463 SNP Detail

Summary

• ID
  rs30824463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127541091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG AGCCATCAGC AGCAATTTAC
  R
  GTGTTCACTC CTAGGACCCT CTAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46448473	mCV22734979	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss50947141	NES14150429	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A		G	G	G	G	G	G	G	A	A
ss147734711	ENSMUSSNP6821175	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30824463					SNP	A	A	A	A	A	G	A	A	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947141	NES14150429	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127541091 () rs orientation: forward

Symbol	Name	Function Class
Myo1a	myosin IA	within coordinates
Rr213603	regulatory region 213603	91 bp distal
Rr221966	regulatory region 221966	1354 bp proximal
Tssr3395	transcription start site region 3395	59 bp upstream
Tssr96244	transcription start site region 96244	1705 bp downstream
Tssr96245	transcription start site region 96245	1670 bp downstream
Tssr96246	transcription start site region 96246	1572 bp upstream
Tssr96247	transcription start site region 96247	1590 bp upstream