rs30824677 SNP Detail

Summary

• ID
  rs30824677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136855727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACACACATC CTCTATACAG TCCTGGCTGG CCTAGAACTT AGAACTTGTG ATTCTCTTGT
  CTCTCTCTGT TTTAAGTGCT AGGATTACAG CCATGAACTA CCACAGCAGA TTCATTGTCG
  ACTCACTTTT ATGACTAAAT ATCCATAGGA GATTTTGAAT TGTTATGTTG CTGCCTTCAG
  Y
  CACCATTCAG AAGCATGGAC AGTAGTATTT TTTCTTCCTG TGAAACACAA TAACCCAGAT
  TGCTAGACAT ATCTTAAAAG TGGCTGGTAA GTTCTAATAA TGTCATGAAC ACTTACCTAC
  TGAATAACAC CAGATAATGT TCTATCCTTC AAGACTTGTC TGCATAAGAA ATGTTTGGGT
  CATAATGTAT AGGGTTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46988927	NES10875357	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30824677					SNP	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46988927	NES10875357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136855727 () rs orientation: forward

Symbol	Name	Function Class
Rr585922	regulatory region 585922	368 bp proximal