rs30824796 SNP Detail

Summary

• ID
  rs30824796
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130633275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCACCTC AACCCTCAGA
  TCATGGTGTT AAACCTTACT TATCATAGTT GTCTGGGTCA AGGGGCTGGT AAGTGACCTT
  GTAGCACTCA ATTCTCTTCA GGAAGTCCTC CATCACATTC TCCCTATTCC TTTCGGGGTA
  GTCAGGGCTC GACACTTTTA CCTCCTGAAA TCACAGCAAC ATAAAGACCT GGTCAGAGTT
  M
  TGTTCTTAAG AGCCATCCTA CAAATAGCCT CTTCTAAAGA ACAGAAAAAG AAGTCCTTAA
  AGCAGCTTGT CACCAGAGCA CTGGCATTCC CCAGTCACTG AGCACTCTCA TCCTGTCCTG
  TGACCCTGGC AACCAAGACA GGGAAGATGG TGGGGAGTCA TGTGCTTTCC TTTGGCCAAA
  GGACAGAGGC AGCTATGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49673732	NES12997197	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30824796					SNP	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673732	NES12997197	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130633275 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm29427	predicted gene 29427			Intron
Pfkfb2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr417945	regulatory region 417945			1584 bp distal