rs30824800 SNP Detail

Summary

• ID
  rs30824800
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130633014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCAGCTC CTGCCTCCAG
  ATTCCTGCCC TATTTGAGTT CCTGTCCTGA CTTTCTACAA AGATAGACAA CAATGTAGAA
  GTCCAAGCCA AATAAAATCT CTCCTCCCCA ACTTGCTTTT GATCATGGTG TTTCATCACA
  GCAATAGTAA TTGTAACTAA GACAATGTCA CAATAAAAAA CTCTGTTCTG TGAAATGATA
  M
  AAATATCATA GGTTTAGATT ACCAGAAGAA ATTAGAGACC AAAAGAGAAA GACAATTTTC
  CTTTCACCTC AACCCTCAGA TCATGGTGTT AAACCTTACT TATCATAGTT GTCTGGGTCA
  AGGGGCTGGT AAGTGACCTT GTAGCACTCA ATTCTCTTCA GGAAGTCCTC CATCACATTC
  TCCCTATTCC TTTCGGGGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49673736	NES12997189	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30824800					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673736	NES12997189	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130633014 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm29427	predicted gene 29427			Intron
Pfkfb2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr417945	regulatory region 417945			1323 bp distal