rs30824858 SNP Detail

Summary

• ID
  rs30824858
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130729451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGATCTG GGACTCCCAG
  AGTCCTGCAG AAAAGACTCC TGACGGTCAT TGGCAGGGAG GGTGACGATT GACAAGGCCC
  CTTCAATGCT TCCTCATTGC CCCATGGAGA CAGCTTTGTT CCTAAAGCAC CACTGGGCTT
  CAGAAAGTTC TGGATGGCCT AGTGATGTTG GCCTTTATGT GAGCCATATA AGGACTTGAC
  M
  CTTTGGAAAC AGTAGCCTGT GGTGTCAGAA TGCTAGCCAT GCAGGGAACC TGGATTTGGT
  GAATAGTAAT CAAACTGGGA ACTAAGTGCA GCCACACCCT GGGAGAGCCT AGAGAGGACC
  AGCTAAGGCA GGGAAGAGCA GGACTTCCCT TGACAGTAGT CCCCAAGGGA GGGGACATGG
  TAAATTGTGG TAGGAAGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49673272	NES12995487	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30824858					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673272	NES12995487	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130729451 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	within coordinates
Rr30372	regulatory region 30372	1151 bp proximal
Tssr8570	transcription start site region 8570	1074 bp downstream
Tssr8571	transcription start site region 8571	1368 bp upstream