rs30824861 SNP Detail

Summary

• ID
  rs30824861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130728898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCAGCT AAGCCCAGTG
  AACAAAAGGT AACGTGGCTT TCTCCTGGAG GTCTGGGTCT TGCTCCCAGC AAGGGTAGTA
  CGTTGCAGCA GCAACTGTAA CTTGTGCACC AGGGTTCTCC TCTGAGCAGG GAGGCTCCTG
  ACAAAGGCCG CGAAGACTCA GGAGTTCAAG CCCCAGCCTT CCTTTTCTGT ACTCTCTTCT
  Y
  CACTGCAGCC AAGTATTCTG AGTCTGAAAC CTGGGTAAGA CAGAGCCAGC AGCACACATT
  AGATACAGAA CACATAGCCA CTCAGGAGAG GCTCTTATTT TGAAGTGGAG GGCAATAAGC
  ATCAGGGTCA ACTTAGCAGT CTCCAGCAAT GCCAAACCTG GTGATGCTCT GCTCTTCCCT
  CTGCACATGC AGACCATCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49673275	NES12995484	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30824861					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673275	NES12995484	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130728898 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	within coordinates
Rr30372	regulatory region 30372	1704 bp proximal
Tssr8570	transcription start site region 8570	521 bp downstream
Tssr8571	transcription start site region 8571	1921 bp upstream