rs30825705 SNP Detail

Summary

• ID
  rs30825705
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130631957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACATTTCCT AAGGCAATGT TCCCACAGGT
  CTCCGTGCTT TCTTCCTTCA GCATAACATT TTACTATACC CCACACCAGG CAAGCCCTCA
  CTGTTATGAT GTCTCACACT GATCAGACAT TTCCTCTTGA GTGAGGCAAA CTTTAAAATT
  K
  ATTAAAACTG ATGACACATC TCCAAGGGAT ATCCTACAGC ATTCTAGTTC CAATTTGCTA
  AATCTGGAGc agcggttctc aactagagat gatttgtgcc cctaagagac ttttggtagt
  gcctgaaaac atttcagtca tcacagcttg                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49673741	NES12997270	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T		G		T	T	G		G
ss145474341	ENSMUSSNP927384	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T					G
ss319972907	CHEV_1_132600797	CHEVERUD	SCREENING_POP	f	SNP										G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30825705					SNP	T	T	T	T	T	G	T	T	T	G	G	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673741	NES12997270	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130631957 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm29427	predicted gene 29427			Intron
Pfkfb2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr417945	regulatory region 417945			266 bp distal