rs30825707 SNP Detail

Summary

• ID
  rs30825707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130631846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATAACAT TGTTTCATCA
  AGATACAACT GTGTACCCAG TAATCCCAGC ACTATGAAGT TGGGAGCAGG AGGACCAGGA
  GTTTAAGGTC ATCCTCTGTT ATACAGTGAG TCAAAGGCCA GCATTGATTC CTTGACACTG
  TCTCAAAAAC ACAAAGCAAA ACACATTTCC TAAGGCAATG TTCCCACAGG TCTCCGTGCT
  Y
  TCTTCCTTCA GCATAACATT TTACTATACC CCACACCAGG CAAGCCCTCA CTGTTATGAT
  GTCTCACACT GATCAGACAT TTCCTCTTGA GTGAGGCAAA CTTTAAAATT TATTAAAACT
  GATGACACAT CTCCAAGGGA TATCCTACAG CATTCTAGTT CCAATTTGCT AAATCTGGAG
  CAGCGGTTCT CAACTAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49673743	NES12997265	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30825707					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673743	NES12997265	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130631846 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm29427	predicted gene 29427			Intron
Pfkfb2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr417945	regulatory region 417945			155 bp distal