rs30825710 SNP Detail

Summary

• ID
  rs30825710
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130630867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTTTCTCA AAAACACCAC TGCAAACTAT
  CTGCTTTATA GCCATGGGGT TTTTCTTAAA TTTAAATAAG AGCTCATTCA AAATAATGAC
  CAAGGAAAAA AGACACAACA AGGTAACTCA TTATGGATCT CCCATCAGAG ATAAAACCCT
  W
  CAAACATACA TACATACATA TAAATATGAA TATCCCTCTA GAATGCTTTC CTACACAGGA
  CTTAGAGCAA ACTAAAGATA CCTCTTTATG TCATATCTGG GGCAGTGCCT TTCAGCCATT
  ATTATGGAAA TGTTTCTAAA AACGAGTATT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss49673746	NES12997327	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T	A
ss319972906	CHEV_1_132599707	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30825710					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673746	NES12997327	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130630867 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm29427	predicted gene 29427			Intron
Pfkfb2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr417945	regulatory region 417945			586 bp proximal