rs30826523 SNP Detail

Summary

• ID
  rs30826523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:61314039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCCTTC CACATCAATC
  ACTAATAAGA AAATACCTCC ACAGACTTGC ACTTTCACAG TGCAAGTTTG CCCAGATAAC
  TTTAGCTTGT GTCAAGTTGA CAGCATACTA GTTAGACAGG ATGTGAGGGC TTTATCTGGT
  GGCAGAATTC GACTGTAATT TAAACAACCC AAAGTAGTTC TGAAGCTTTT TAGTAACTGG
  Y
  TTAGAAAAAC AGGGGGTTAC TCAGTAGATT CATTTGACTT TCATCATGAT CCAAAACTAA
  TTTTACACAC ATTCATGGTC TGAAACATCA GCCATAGAGT ATGTCCTGAG ATAGTCTTGC
  CAAGATCCCA GTGTTTTCAC TCTCTCAGAA TATCACACTG AAGGCTCCAA TTTGCCATCA
  AACAAGAAAG GGGAGGGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46988954	NES10792665	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30826523					SNP	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46988954	NES10792665	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:61314039 () rs orientation: forward

Symbol	Name	Function Class
Gm40061	predicted gene, 40061	within coordinates
Rr72571	regulatory region 72571	561 bp proximal
Rr81199	regulatory region 81199	1963 bp proximal