rs30826695 SNP Detail

Summary

• ID
  rs30826695
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117536093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGTCCTTG TTCTCATGTT TCTAGTTTTC TCAGTGTCTT
  AGAAGAAGTA TAGGTGCTTC ATAATGTGAA GTAAATAGAA GGGAGGTGCT GTAGGCGAGG
  Y
  GACGAAGCCC TGTGTGCTGA ATGAAGTAGT GAAACCAGGG CATTATAGGG TGGATGACAG
  TGGCTGTTAC AGATCAGGGA CAGAATGTTA AAATGGAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46450096	mCV24240474	ABI	CRAMUS_MOUSE	f	SNP		C				T		C
ss52610287	NES15495032	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C		T	C	T	T		C	C		T
ss138890302	ENSMUSSNP4353332	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss324202205	CHEV_12_118810946	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30826695					SNP	C	C	C	T	C	T	T	C	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52610287	NES15495032	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117536093 () rs orientation: forward

Symbol	Name	Function Class
Gm54711	predicted gene, 54711	1869 bp upstream
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	within coordinates