rs30827355 SNP Detail

Summary

• ID
  rs30827355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:61314105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCCCAGA TAACTTTAGC
  TTGTGTCAAG TTGACAGCAT ACTAGTTAGA CAGGATGTGA GGGCTTTATC TGGTGGCAGA
  ATTCGACTGT AATTTAAACA ACCCAAAGTA GTTCTGAAGC TTTTTAGTAA CTGGTTTAGA
  AAAACAGGGG GTTACTCAGT AGATTCATTT GACTTTCATC ATGATCCAAA ACTAATTTTA
  Y
  ACACATTCAT GGTCTGAAAC ATCAGCCATA GAGTATGTCC TGAGATAGTC TTGCCAAGAT
  CCCAGTGTTT TCACTCTCTC AGAATATCAC ACTGAAGGCT CCAATTTGCC ATCAAACAAG
  AAAGGGGAGG GTGATGCACT TCTCTTTTGC CCTCAGTACA ATGCTGTCTA GTTCCCTTAA
  GGTAACGGAT GCATGTGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46988956	NES10792666	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30827355					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46988956	NES10792666	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:61314105 () rs orientation: forward

Symbol	Name	Function Class
Gm40061	predicted gene, 40061	within coordinates
Rr72571	regulatory region 72571	495 bp proximal
Rr81199	regulatory region 81199	1897 bp proximal