rs30827357 SNP Detail

Summary

• ID
  rs30827357
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:61316069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCTTCC TTCCTTCCTT
  CCTTCCTTCC TTCCTTCCTT CCTTCTTTCC TCCGTTCCTT CCTCTCCCCA TCTCCCCCTC
  CCTTCCAGTG CCATTGAAAC ATCAGTCTTA TTTTTTTCTC ACTCCTACGC CTGTCCTTAA
  GCATGTTGTC AGTATATTAC TCCATAATAC ATGAAAAGAT AAATAGAAAA TTTCAGGAGG
  M
  TTAGCAGGCA CACATTGGGC AGATTAGAAA AGAAAATGGA TTTTTAGACA TGGAAAAGAG
  TTTGTTATAA GACATAAGAA AGCAAGTACA TTCAATGTTG TTGTACCTGA AACTCACAGT
  ACAAAATAAG ATTCAAGAAG AATAGGAACA GAAAAAAATA GAAATGATAT TTCTTTCATC
  ATAGCCTGCG TGTGTGTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss46988958	NES10792633	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs30827357					SNP	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46988958	NES10792633	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:61316069 () rs orientation: forward

Symbol	Name	Function Class
Gm40061	predicted gene, 40061	within coordinates
Rr72571	regulatory region 72571	869 bp distal
Rr81199	regulatory region 81199	within coordinates
Tssr888	transcription start site region 888	1270 bp upstream