rs30827909 SNP Detail

Summary

• ID
  rs30827909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:103961377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGACACGTC ATCCCTCTGC ACTCACTCAG CCATAGGATG
  TTTACATTCC TGGTGGTCCT TAAGGATGGA CTTGGAGAAG AAAAATATGG CCAGAGAAGA
  Y
  GCTAGGGGGA GAGACAAAAG AGTATACTTC TGTACCTAAT TGTCCAAGAA AAAGATGAAG
  CAATGAAGTT GGGCACAATA TTACATGTAA AGGACATGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46240386	mCV23903148	ABI	CRAMUS_MOUSE	f	SNP	T					T	C
ss47488493	NES11193686	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C		C	T	C		T	T	T
ss322824571	CHEV_8_105758645	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30827909					SNP	T	T	C	C	C	T	C	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47488493	NES11193686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:103961377 () rs orientation: forward

Symbol	Name	Function Class
Rr668523	regulatory region 668523	within coordinates
Tssr79019	transcription start site region 79019	1130 bp upstream