rs30828668 SNP Detail

Summary

• ID
  rs30828668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130662973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATGCCTA TTAAGTGCGC
  ACAAATGCTA ATCTAAACAA ACATTCCACA GATTCCTTTT GGTCGCTGAC TTTACAGGAA
  ATAAAGTGGT ATGAAGTCTC CAAGTAGCTC ACCCAGTAGT CCGATGATTG GCCTTGTCGG
  ACTGCGTTCT CTATTAAGTT AGCTCTTTGA CAACTTCATG CATGTATGTA ATTCGTTCTG
  Y
  TCGCTCTCTC CTACATCCTT ACTGTCTTCC TGCCCTGTCA CCCTTCCCTC CCTTCTACCT
  GCTCCTTTCC CAGATTCCTG ACTTGGGACT TTGTCATGTG GTCCATTTAG TTTATCCAGG
  ACCATCTTTG TGACCAGTGG TGGGGTCACC GGGGGGTACA CTGAATCTGT CCCTAGGAAG
  TAGTTCAGCA GTTGGGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49673590	NES12996654	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30828668					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673590	NES12996654	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130662973 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AA986860	expressed sequence AA986860			Intron
				Noncoding-Transcript-Variant
Rr372023	regulatory region 372023			1853 bp upstream
Rr417951	regulatory region 417951			1418 bp distal
Rr417952	regulatory region 417952			917 bp distal
Tssr13524	transcription start site region 13524			1383 bp upstream