rs30829165 SNP Detail

Summary

• ID
  rs30829165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185043959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAATTTAA ACACTAGCTG
  TGTGCACATG TCTGAGGCTG GCTTTGAACC TATGGATTCA TGCATGCCAA ACAAGTGCTT
  CCCACCGAGC TGTCTTCCTA GCTCTTTCTC CTTTGGATGT CATTAAGTTC CCGGACACAC
  AGCTAAACTG GACATCTTAT ATGCATAGCT CTGTACAGAA TTCATTAGTG TTTTCCCTTC
  Y
  GATAAATACT TACAAGTAGA ATTCTTTATA ATGAAACTGA GGTCATGCTT TCAAATAGTG
  TAAAAGAATT TCTTAAGGTT TGTCCTTGCA AACTCAAGAA TTCTCTTTAT TTTATTAACA
  ATATTCTATA CTTCAGCACA CAGTTGACTT ATGACCTAAA GACCAGTATA AATTACTGTT
  GATAAAAGTG GGTGAAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46448839	mCV22896884	ABI	CRAMUS_MOUSE	f	SNP	T	C				C	C
ss46730338	NES10646151	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	C		C	C	T		T	C	T	C		C
ss146427363	ENSMUSSNP1053760	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					C
ss320174678	CHEV_1_187135641	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30829165					SNP	T	C	T	C	C	C	C	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46730338	NES10646151	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185043959 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	425 bp upstream
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir194-1	microRNA 194-1	1557 bp upstream
Mir215	microRNA 215	1819 bp upstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	1557 bp proximal
Rr425362	regulatory region 425362	1043 bp distal
Rr425363	regulatory region 425363	86 bp proximal
Tssr10600	transcription start site region 10600	423 bp upstream
Tssr10601	transcription start site region 10601	1908 bp upstream