rs30829427 SNP Detail

Summary

• ID
  rs30829427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130661981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGCCCT TAAGTCTCCA
  AAAGAGGTCA AGGGTGAAAA GAAATGAAAC TCTCACCTTG ACGGTTCTGC TTGTTTCTCA
  GGTTTCTTAT CTGGCAGAAA TGCCTAGGGT TTCGATTGCT GCCCTGATAC AGCACCCAAG
  TTTCAAGGTT ATAAATTTGG TAGAAGGGCA CAATGCGGCT AGGTTAGGCC GAGCCAGGGG
  Y
  GGAGAGTGAG AAGGTGGTGA GAAAAGAAAG ACTTCTTCTG CTCAGACTCT TTGTATCAGA
  AACTAGGTGT GGAAATCCTC ACTCACCCCG TGACTGGGTG GTGTCAATGG CATCCTCTGC
  AACTGCATGT GGTGCTGTGT TTTTATTTAC GGGTGTGCCG TCAGAATAAC CGATCAATCT
  GGAAATACAA AACTGAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49673599	NES12996645	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30829427					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673599	NES12996645	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130661981 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AA986860	expressed sequence AA986860			Intron
				Noncoding-Transcript-Variant
Rr417950	regulatory region 417950			1624 bp distal
Rr417951	regulatory region 417951			426 bp distal
Rr417952	regulatory region 417952			within coordinates
Tssr13523	transcription start site region 13523			1622 bp upstream
Tssr13524	transcription start site region 13524			391 bp upstream