rs30829431 SNP Detail

Summary

• ID
  rs30829431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130660200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGAAAAG CTTTTAAGGG
  AAGGCAAAGC TATATATAGG GCTGTGCTGG GGAGTGCTGT AAGAGTGTCT GACCCTTTAC
  ACCGGACCTG GGGTTTTCAA TCTCTGTTGA TCAAATCTCT CCGTTAGCCT GAGATTTTCC
  AGAATTGGAA TATTTTTATG GAGGACCGGG GGACATCTCT TCCGTTTCTT TATTTAACTT
  R
  CATAATCATA TTGAACAAAC AGAAGCCAGA CCCAGGCATG GTGGTATCCA CCCATAATCA
  TAGTACTCTG AAGATGGAGG ATGGAAAGTT TGAAGCCAGG CTGCTGGGAA ATACAGCAAG
  TTCCAGGCTA GCCTATCCTA CCTGGAAAGA CCTGACTCAA AAAAAAAAAA AAAAAAAAAA
  AAAAAACCAA CAACAAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49673608	NES12996684	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30829431					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673608	NES12996684	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130660200 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AA986860	expressed sequence AA986860			Intron
				Noncoding-Transcript-Variant
Gm70818	predicted gene, 70818			1588 bp downstream
Rr417949	regulatory region 417949			477 bp distal
Rr417950	regulatory region 417950			within coordinates
Rr417951	regulatory region 417951			269 bp proximal
Rr417952	regulatory region 417952			1356 bp proximal
Tssr8565	transcription start site region 8565			472 bp downstream
Tssr8566	transcription start site region 8566			411 bp downstream
Tssr8567	transcription start site region 8567			362 bp downstream
Tssr8568	transcription start site region 8568			328 bp downstream
Tssr13523	transcription start site region 13523			155 bp downstream
Tssr13524	transcription start site region 13524			1387 bp downstream