rs30830516 SNP Detail

Summary

• ID
  rs30830516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53531876 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAGTG CTGGGATTAA AGGTGTGCGC
  Y
  ACCACCACCT AGCTCATGTT TTATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46450145	mCV22960234	ABI	CRAMUS_MOUSE	f	SNP	C		T
ss149013914	ENSMUSSNP4001210	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G
ss324341593	CHEV_13_53473209	CHEVERUD	SCREENING_POP	r	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30830516					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53531876 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	261 bp distal
Rr403780	regulatory region 403780	237 bp downstream
Rr480032	regulatory region 480032	within coordinates
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	475 bp upstream
Tssr122583	transcription start site region 122583	467 bp upstream