rs30831152 SNP Detail

Summary

• ID
  rs30831152
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130372610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATCCATAA ATGCAGTTGT TTATGATCTC AAATTCACTG
  GGTAATCGAT AAAACACCGA ACACAAACAT AAGTACTGAC TGAAGAGTTG AGCAACTTAG
  S
  ATAGAGGGTG GTATGCAACA ATGGATGCAG TTACAATAAT GATGCACATG CCCAAAATCT
  GAAAGTTGAA GGGATCCAAG AAGAAGTATG TAACTTTTAA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49674558	NES12990608	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	C	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30831152					SNP	G	C	G	G	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49674558	NES12990608	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130372610 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd55	CD55 molecule, decay accelerating factor for complement			Intron
				Noncoding-Transcript-Variant
Rr417916	regulatory region 417916			1635 bp distal