rs30831153 SNP Detail

Summary

• ID
  rs30831153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130372484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGGAAAG GTTTATTTAA
  ATGTAAGCTT GTTCCAATCT GATTGAAGGT GGTGACTGAC GAAAGATATC ATTTTAGAGT
  AAGAACTTGG ACTTCACTCA CATTCCGTAG GTAAAGAATT TGAGTCTCAA AGGAAAGTTT
  TAAAGAGAGG CTATTTGTAG AGTACAAATG ACACAAGTGA CCAGGAAACT AATAAAAACA
  Y
  AATTCTCAAG TTACAAGCAA GACCTTTATC CATAAATGCA GTTGTTTATG ATCTCAAATT
  CACTGGGTAA TCGATAAAAC ACCGAACACA AACATAAGTA CTGACTGAAG AGTTGAGCAA
  CTTAGCATAG AGGGTGGTAT GCAACAATGG ATGCAGTTAC AATAATGATG CACATGCCCA
  AAATCTGAAA GTTGAAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49674559	NES12990606	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30831153					SNP	T	T	T	T	C	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49674559	NES12990606	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130372484 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd55	CD55 molecule, decay accelerating factor for complement			Intron
				Noncoding-Transcript-Variant
Rr417916	regulatory region 417916			1509 bp distal