rs30831349 SNP Detail

Summary

• ID
  rs30831349
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130301652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTTGCCC AGGGGAAAAT
  TTGGCAAAGT CCAGCCTGGG GGCTGCAGCC AGAACCTCAA AGTTTAGGTT TTGGGTCCTG
  GGAGAGATGT TGCCCCTGAA GAGACTAGGG TTATCATGCC CTGTGTTCCC TTTGTGCAAC
  ATTGCTTAGC TTCCTGCTGA CTTCCTCCCT TTGTGTGATA GCTTTCTGCT GACTCTGTCG
  M
  ATTTCTCCCC ACAGCCTGTA GGGAAGATGC TGTGCTTCTT AATAAACTTG CTCTGTGGAT
  GACATAGCCT GTGCAAAACC TCCAGATCCC AAACCTTCCC ATTTTTATTT TCTGATCCCA
  GTCATCCCTC CCAGGATCTC TGATCTTCCC TCTCAAGATC CTGTCAAAGA ACAACCTGCT
  AGTCTATGTT GTCCTGTAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49674815	NES12991707	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30831349					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49674815	NES12991707	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130301652 () rs orientation: forward

Symbol	Name	Function Class
Rr417908	regulatory region 417908	1468 bp distal
Rr417909	regulatory region 417909	1566 bp distal
Rr417910	regulatory region 417910	within coordinates