rs30831352 SNP Detail

Summary

• ID
  rs30831352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130301319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCCTGGGG GCATTTAAGA TGAGGCAGGT
  AGCCAAAAAA TGAATCACTG TTCTTTTTCA GGCTAAGGTC AGTGGGGGAC TGAGGAGGAA
  TCCCATGGCT GCTTCTCCAC TTGTGCTCTC TGGTCAGATC GCTCAGGATG CTGCTGACCA
  Y
  GTGCTTTCCC TCAGGATCAC TGAGAACATT GTTTTCCATG TTGACCCTCC TCCTCTCTGT
  TGCTGGGAGC CAGGCAGATC TAAGGCTTTC TCAGAGACCC TGATGAAAGA ACAAAGAGAA
  TACTAGTTCC TTGTTCTTGC CCAGGGGAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49674818	NES12991704	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	T		C	C	T	C		C
ss319972000	CHEV_1_132270159	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30831352					SNP	T	T	T	T	C	T	C	T	T	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49674818	NES12991704	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130301319 () rs orientation: forward

Symbol	Name	Function Class
Rr417908	regulatory region 417908	1135 bp distal
Rr417909	regulatory region 417909	1233 bp distal
Rr417910	regulatory region 417910	195 bp proximal