rs30832594 SNP Detail

Summary

• ID
  rs30832594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29980656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA TCATTCTCCC TGTTCATTTT
  Y
  TGGCTTATTT TTCTCTTTAA ACGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46449777	mCV22974781	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						C
ss60991466	NES16140586	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	T	T	C	T	T		C	T	T	T		T
ss148672326	ENSMUSSNP3385748	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss322132949	CHEV_7_31066250	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30832594					SNP	T	T	C	C	C	C	T	T	C	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991466	NES16140586	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29980656 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	within coordinates
Cpgi18786	CpG island 18786	211 bp distal
Rr400235	regulatory region 400235	664 bp downstream
Tssr65667	transcription start site region 65667	1089 bp downstream
Tssr65668	transcription start site region 65668	1043 bp downstream
Tssr65669	transcription start site region 65669	647 bp downstream
Tssr71721	transcription start site region 71721	807 bp upstream
Wdr62	WD repeat domain 62	812 bp upstream