rs30832845 SNP Detail

Summary

• ID
  rs30832845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:46811638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCAAGAC CTGTTTATAA
  AAATAGAGAC TAAGCTTATG GTGGGAACTT GCTGTCACAT GGCCATTTTG AAGTTATGGT
  GGTACCTTTC TGCTGTGCAG GAATTTGGTT GCTTTACTTT CATAGGCCCC GTGAACTTTA
  CATGTTTGAA ATCAAATGCA GAAAGAATGG GGCTAAATAA CCCATTAGGG AAAGCCCTGG
  Y
  TATAAATGGA GCACAAAGGA TAAAATGTGA AATAGTAAAA TAGTACCGAA GGGAAGGCGT
  GAAGACTAGT TTAAAAAGTT GTTTCTCATG CGAAACAGTG ACTACACGCT CTTCGTTAAA
  ATCCAAAAGA TCCATTTGTG TGAGTGAACT ACATCAAGAA AAGTCTCAGG GCCAGCAAGG
  TGATTGAGCA AGTAAAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	SM/J
ss39236099	mCV25349241	ABI	CRAMUS_MOUSE	f	SNP	T	T					C		C
ss49176214	NES12498745	PERLEGEN	MM_PANEL2	f	SNP		T	C	T	C	T		C		C
ss139387204	ENSMUSSNP2086303	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324590198	CHEV_14_47193856	CHEVERUD	SCREENING_POP	f	SNP											T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	SM/J
rs30832845					SNP	T	T	C	T	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49176214	NES12498745	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:46811638 () rs orientation: forward

Symbol	Name	Function Class
Gm49319	predicted gene, 49319	within coordinates
Rr491231	regulatory region 491231	912 bp distal
Rr491232	regulatory region 491232	219 bp distal
Rr491233	regulatory region 491233	1230 bp proximal
Rr491234	regulatory region 491234	1656 bp proximal
Rubie	RNA upstream of Bmp4 expressed in inner ear	within coordinates
Tssr128285	transcription start site region 128285	1668 bp downstream