rs30833057 SNP Detail

Summary

• ID
  rs30833057
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:102126472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTAACAT TGCAACCCTA
  TAGCAATATT TTTGTATCTA AATGCCCAAT GCATGAACAG TTGTATAAAG CAGTATCATT
  TATTTATTTA TTTATTTATT TATTTATTTA TTTATTTTTG GCTGTATTAA AATTTAACTC
  CACCACTTTT TCTTTTTCAT TTTCTTTTTT AATGTAATGA CTGAAAGTCA CAAAGCATCA
  K
  GCTAAGACTA CGCTCGTTTT GCTATATGAT TCCTACAATA CACTAAGCTT CTGGTTTCTT
  TTTGTTGAAG GTCTCCCCCA TAAATTACGT CTTTGAGAGC CTGTGATAGG AAAAGATATG
  ACTGCTTGCT TAATGTTAGA ACTCAGGTAG CTGGCAGAAT TCACACACTT AGCTCCTGAG
  GAATTTTATT AGTGGGCACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39225953	mCV22290628	ABI	CRAMUS_MOUSE	f	SNP	G	G	T					T		T
ss49352247	NES12571136	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T		G	T	T	T	G	T	G	G	G
ss146740370	ENSMUSSNP1037152	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30833057					SNP	G	G	T	T	T	T	T	T	G	T	T	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49352247	NES12571136	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:102126472 () rs orientation: forward

Symbol	Name	Function Class
Gm52170	predicted gene, 52170	475 bp downstream
Lmo7	LIM domain only 7	within coordinates
Tssr126932	transcription start site region 126932	1556 bp downstream