rs30833816 SNP Detail

Summary

• ID
  rs30833816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130298969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATCCCACG GGTAAAATGG CACGGACCAC
  TGGACACAGA CTGAAGTCTA CACCAAAGTA CTTGGAAGAC GCAAGGATAG TCACTGCAAA
  GCTGTGGTGC CCAAGGTTTA TAAGCAGAGA CCCGCACTAG GTTTGAAAGG ACTAGCCCAG
  R
  CGGGTGGCGC CTGTGAGAGG CTGGCGCCTG TGAGAGGCTG GCTGTTCGGG AGAACTGTGT
  TTTTCACAAG CCAAAGACTG AAGTCATTCC CCTGGGTTTA GTTAATTCTC TAAGCCTAGC
  TTGGGACCCA ACAACTGCGG ATCCCATGCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49674842	NES12991678	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G	A	A	A		G	G	A	G		G
ss319971981	CHEV_1_132267809	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30833816					SNP	A	A	A	A	G	A	G	A	A	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49674842	NES12991678	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130298969 () rs orientation: forward

Symbol	Name	Function Class
Rr417908	regulatory region 417908	989 bp proximal
Rr417909	regulatory region 417909	1096 bp proximal